OK. Gray stains + rust specks.
Easy stuff first: put a pinch of the Iron Out directly on the rust specks. You'll have to get into the water to do this and will probably need to put some Iron Out in a baggie, so you can open it underwater, and get a pinch out. Try NOT to stir the water, because you want the Iron Out to sit on the specks for awhile, and not be carried away by currents in the water. (So, do this with the pool pump off)
Not so easy: put a pinch of Iron Out on a gray stained area, and put a couple of Vitamin C tabs on another area. Wait till they are gone, and then see if it changes the stain at all. I doubt that it will. In the absence of added silver, copper or zinc in your pool, gray (to black) stains are probably fungus staining THROUGH your liner from underneath. Here are the best pictures I could find, all from Tara Liners:
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Tara sells a "Stain Barrier" product to prevent this, and has more info on their page for pool owners.
That's not going to help you much, though. Fungal staining migrates THROUGH the liner material, from underneath, so you can't remove it, since it's IN the liner. Very high chlorine will often lighten the stains -- but you have to get high enough where you risk 'lightening' the WHOLE liner. If you have any chlorine tabs, you can test by breaking a tab, and putting a small piece ON the liner for an hour or so. Do NOT leave it there; doing this is not good for the liner because of the low pH, and again, may lighten the liner itself, from the very high chlorine under the tab. (If you have some granular cal hypo, or a cal hypo brickette, that would be safer choice for testing.)
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