I haven't installed a Polaris in years, but in times past, there was usually a standard female pipe thread at the bottom of the Polaris connection in the pool. If there is, I'd put a threaded PVC plug in it. Also, it would be best to plug the connection to the booster pump as well. Stagnant pool lines can grow populations of pathogenic bacteria, that can be a hazard if they get into the pool.
The safest thing would be to cut the line to the booster, pour polyquat or copper algicide into the line (dilute 5:1) till you see it coming into the pool, cap the pool side opening, and then cap the pump side opening in the piping. The algicide will tend to prevent anything from ever growing in the line -- since you might want to reuse it in years to come, and it will mean that, should someone fiddle the plug out, what drools into the pool from the line won't be dangerous.
Ben / PoolDoc
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