Unless the numbers on your fill water are totally out of whack, I don't see where adding fill water will "unbalance" your chemicals enough to matter. Once you put the water back in, just raise your chlorine back to shock level and you should be good from there. The TA and CH are not crucial at this point, and topping off shouldn't affect your pH that much if your tap water pH is within normal limits.
Glad you found the leaks, hope it's not too much of a pain to fix, once you get in..
Janet


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