Kevin, I'm not a chemist (... but I play one in pool owners' backyards for a living) I can't properly remember how it works, but I recall reading on the 'old forum' about needing to 'gas-off' the byproducts of chlorinating. Whether or not failure to do so will cause an algae outbreak, I can't recall. To gas-off a pool you do need to remove the solar, or retract an auto cover for an hour or so a day. If you didn't do this for a few days at a time, it could be the reason for the "solar cover/algae corelation". I'm sure someone else here can tell you the process better.
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