The primary job of CYA is not to protect your liner from high Cl levels. It just happens to do so because it inhibits Cl action when it is present in significant quantities, as mentioned before in this thread. Your liner most likely faded due to age, as mentioned by CarlD, a few posts up. If I remember correctly, most liners can take 15 ppm with no problem, but that is the upper limit. Other liner pool owners may remember better than I.
Michael
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