You can do this with the system installed but set to not generate chlorine. There are manuals in pdf format on goldline's website, http://www.goldlinecontrols.com
Those may help, in case you haven't looked through them before. Anyway, you certainly can have the cell installed, but turned off. Are you installing the AquaLogic controller or is it the AquaRite control box? Either way, you can control the cell while you balance your water . . .
SJohnson
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