I gather the BEST glue is Boxer #100.
If you have a piece of liner (overlap liners frequently have extra) that it makes an invisible patch. I like to double patch, first with a thin patch from a standard patch kit (but I gather the Boxer works FAR better as glue), then with an over-patch. That way, if the edge of the under patch isn't perfect, then the over patch seals it.
I cannot advise you on hrsdennis's advice. It's one of those places where his work in the field is important and certainly supercedes my experience, but I HATE the idea of cutting a healthy, new liner. But short of draining and re-setting the liner, I don't know what your choices are other than:
1) Leave it alone--I agree, a potential problem.
2) Try to pound it down--a long 2x4 applied carefully MAY do it (I'd sand the "hammer" end first).
3) Same as 2) but patch over it.
4) Dennis's solution.
My inclination is 3) but unless someone like Poconos or PoolDoc says otherwise, Dennis is probably right.
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