If you're pool is 26' x 4', the volume is ~14,000 gallons. If it's 26' x 4.5' (54"), it's ~15,000 gallons.
Do this:
1. Check the chlorine again. If the level is greater than 5.0 ppm, you'll need to get a gallon of *DISTILLED* water are Walmart. Mix 1/2 of pool water with 1/2 cup of DISTILLED and retest the pH of the mix. If you use DISTILLED (not bottled, spring, etc.) your pH reading should be about accurate. The problems that high chlorine can screw up phenol red pH testing.
2. Your pH is too low. A pH reading of 6.8 may mean 6.8 . . . OR, it can mean anything below 6.8, such as 5.0 which will damage your liner rapidly. Add 1 box of borax at a time, to the skimmer with the pump running. Do NOT remove the skimmer basket. Retest your pH after 2 hours of pump run time. Continue adding borax until the pH is 7.0 or greater. (Keep up with how many boxes of borax you add - it may matter later!)
3. You're describing mustard algae. It's VERY chlorine resistant. This page covers some more details => http://pool9.net/algae-m/.The water never got green-green but had green spots. I vacuum e them up and a day or two they come back.
4. Meanwhile, each time it re-appears add 2 gallons of bleach in the EVENING and then brush all the spots.
5. Polyquat (algaecide 60) is not particularly helpful with mustard algae. It certainly won't hurt, but won't fix the problem, either.
6. Question: are you near open water? (I'm trying to figure out why some pools are prone to mustard algae, and others aren't.)
Post your results from pH testing, and let us know what you think after you read about the mustard algae options.
4. Retest your alkalinity, once you get your pH above
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