What size pump, and what size/type filter do you have? Many people are having this same trouble this year, and a lot of them have oversized pumps that are pushing the dead algae straight through the filter and back into the pool. If that's the case, you might do better to turn it off and let it settle to the bottom and vac to waste. If that's not the case, and you have a sand filter, you can DE test it (pour a cup of DE into the skimmer and watch for it to come back through the returns) and then use a little DE to help you trap the smaller stuff.
Do you have a working pressure gauge, and if so, is the pressure rising as you are filtering?
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