Shannon,
In order to properly take care of your pool, you really should do your own test. It may seem intimidating but I assure you it is quite simple. The key is to buy a good, drop based test kit that is easy to understand. I know of only two, one of which is sold at the forum's sister site http://www.poolsolutions.com/ (go to main order page, PS234) and the other is made by Taylor however I believe it is more expensive. They may seem really expensive but Either one will be worth their weight in gold and will save you money by keeping you out of the pool store! I started off in my response to your post with this because it will be hard to help you or determine what kind of problems you may have without knowing what your pools reading are for FC (free chlorine), CC (combined chlorine), TC (total chlorine-FC+CC), PH, ALK (alkaline), CH (calcium hardness) and CYA (Cyanuric acid a.k.a. stabilizer). We really need those as well as pool type (i.e.. plaster, vinyl, fiberglass etc.), type of sanitizer you use (chlorine, baquacil etc.) and how many gallons your pool has. To determine gallons, you can post the measurements and depths and I'm sure we can get you pretty close.
Now to your staining. It could very well be metal staining however it may also be mustard algae. Do the stains feel slimy? I know you stated you had water mold (cardboard box like stuff) which indicates a lack of sanitizer so I would lean toward the algae first. Before addressing the stain, you should be sure the water is balanced and is properly sanitized. Did the pool store give you a printout of your test? If so, post that.
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